STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00016504NUDE_C domain-containing protein. (343 aa)    
Predicted Functional Partners:
CCH79_00008603
CS domain-containing protein.
     
 0.756
CCH79_00002369
Uncharacterized protein.
    
 
 0.736
PAFAH1B1
Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.
    
 
 0.736
CCH79_00001445
Uncharacterized protein.
    
 
 0.678
CCH79_00012071
Uncharacterized protein.
    
 
 0.659
CCH79_00001255
CS domain-containing protein.
     
 0.658
CCH79_00005997
CS domain-containing protein.
     
 0.658
ENSGAFP00000030075
annotation not available
    
 
 0.656
CCH79_00003206
WD_REPEATS_REGION domain-containing protein.
     
 0.642
CCH79_00005303
WD_REPEATS_REGION domain-containing protein.
     
 0.618
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.