Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00002438Uncharacterized protein. (227 aa)    
Predicted Functional Partners:
CCH79_00000994
Uncharacterized protein.
    
 
 0.877
CCH79_00010430
Uncharacterized protein.
    
 
 0.877
ENSGAFP00000021478
Itchy E3 ubiquitin protein ligase a.
    
 
 0.832
CCH79_00017964
E3 ubiquitin-protein ligase.
    
 
 0.832
ENSGAFP00000029869
Brain protein I3.
    
   0.796
CCH79_00001140
Death domain-containing protein.
    
   0.795
ENSGAFP00000007775
Superoxide dismutase 3, extracellular b.
    
   0.740
CCH79_00002292
Sod_Cu domain-containing protein.
    
   0.740
ENSGAFP00000002403
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.722
CCH79_00010171
Uncharacterized protein.
    
 
 0.722
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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