Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00003111SP-RING-type domain-containing protein. (1084 aa)    
Predicted Functional Partners:
CCH79_00020043
Small ubiquitin-related modifier.
    
 0.813
CCH79_00013677
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.761
CCH79_00003363
BTB domain-containing protein.
    
 0.761
ENSGAFP00000024142
Ubiquitin-conjugating enzyme E2Ia.
    
 0.761
CCH79_00002851
Ubiquitin-like domain-containing protein.
    
 0.688
CCH79_00012487
Ubiquitin-like domain-containing protein.
    
 0.688
CCH79_00014591
Ubiquitin-like domain-containing protein.
    
 0.688
CCH79_00004772
Small ubiquitin-related modifier.
    
 0.688
CCH79_00007452
SP-RING-type domain-containing protein.
    
 
 0.665
CCH79_00007041
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 
 0.663
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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