CCH79_00012945 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00012945

Uncharacterized protein. (593 aa)

Predicted Functional Partners:

ENSGAFP00000006858

0.727

CCH79_00002159

0.727

CCH79_00005684

0.668

CCH79_00002563

0.668

CCH79_00002565

0.668

CCH79_00012961

0.614

ENSGAFP00000004237

0.611

CCH79_00015921

0.611

CCH79_00000373

0.598

CCH79_00008975

0.587

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00000373	CCH79_00012945	ENSGAFP00000016118	ENSGAFP00000007663	Uncharacterized protein.	Uncharacterized protein.	0.598
CCH79_00002159	CCH79_00012945	ENSGAFP00000020400	ENSGAFP00000007663	SANT domain-containing protein.	Uncharacterized protein.	0.727
CCH79_00002159	CCH79_00012961	ENSGAFP00000020400	ENSGAFP00000008062	SANT domain-containing protein.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.451
CCH79_00002563	CCH79_00002565	ENSGAFP00000031467	ENSGAFP00000031468	BCOR domain-containing protein.	PUFD domain-containing protein.	0.447
CCH79_00002563	CCH79_00012945	ENSGAFP00000031467	ENSGAFP00000007663	BCOR domain-containing protein.	Uncharacterized protein.	0.668
CCH79_00002565	CCH79_00002563	ENSGAFP00000031468	ENSGAFP00000031467	PUFD domain-containing protein.	BCOR domain-containing protein.	0.447
CCH79_00002565	CCH79_00012945	ENSGAFP00000031468	ENSGAFP00000007663	PUFD domain-containing protein.	Uncharacterized protein.	0.668
CCH79_00005684	CCH79_00012945	ENSGAFP00000029709	ENSGAFP00000007663	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.668
CCH79_00008975	CCH79_00012945	ENSGAFP00000020948	ENSGAFP00000007663	TGF_BETA_2 domain-containing protein.	Uncharacterized protein.	0.587
CCH79_00012945	CCH79_00000373	ENSGAFP00000007663	ENSGAFP00000016118	Uncharacterized protein.	Uncharacterized protein.	0.598
CCH79_00012945	CCH79_00002159	ENSGAFP00000007663	ENSGAFP00000020400	Uncharacterized protein.	SANT domain-containing protein.	0.727
CCH79_00012945	CCH79_00002563	ENSGAFP00000007663	ENSGAFP00000031467	Uncharacterized protein.	BCOR domain-containing protein.	0.668
CCH79_00012945	CCH79_00002565	ENSGAFP00000007663	ENSGAFP00000031468	Uncharacterized protein.	PUFD domain-containing protein.	0.668
CCH79_00012945	CCH79_00005684	ENSGAFP00000007663	ENSGAFP00000029709	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.668
CCH79_00012945	CCH79_00008975	ENSGAFP00000007663	ENSGAFP00000020948	Uncharacterized protein.	TGF_BETA_2 domain-containing protein.	0.587
CCH79_00012945	CCH79_00012961	ENSGAFP00000007663	ENSGAFP00000008062	Uncharacterized protein.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.614
CCH79_00012945	CCH79_00015921	ENSGAFP00000007663	ENSGAFP00000005050	Uncharacterized protein.	Uncharacterized protein.	0.611
CCH79_00012945	ENSGAFP00000004237	ENSGAFP00000007663	ENSGAFP00000004237	Uncharacterized protein.	annotation not available	0.611
CCH79_00012945	ENSGAFP00000006858	ENSGAFP00000007663	ENSGAFP00000006858	Uncharacterized protein.	Nuclear receptor corepressor 2.	0.727
CCH79_00012961	CCH79_00002159	ENSGAFP00000008062	ENSGAFP00000020400	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	SANT domain-containing protein.	0.451