CCH79_00010296 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00010296

Uncharacterized protein. (298 aa)

Predicted Functional Partners:

ENSGAFP00000018422

0.880

NDUFS8

0.867

CCH79_00009243

0.867

CCH79_00019510

0.838

CCH79_00004265

0.817

CCH79_00000052

0.811

CCH79_00009725

0.811

CCH79_00014518

0.808

CCH79_00004814

0.796

CCH79_00009521

0.792

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00000052	CCH79_00004814	ENSGAFP00000006463	ENSGAFP00000001196	Uncharacterized protein.	Uncharacterized protein.	0.532
CCH79_00000052	CCH79_00010296	ENSGAFP00000006463	ENSGAFP00000018897	Uncharacterized protein.	Uncharacterized protein.	0.811
CCH79_00004265	CCH79_00009521	ENSGAFP00000013759	ENSGAFP00000016527	Uncharacterized protein.	CoA carboxyltransferase C-terminal domain-containing protein.	0.411
CCH79_00004265	CCH79_00010296	ENSGAFP00000013759	ENSGAFP00000018897	Uncharacterized protein.	Uncharacterized protein.	0.817
CCH79_00004814	CCH79_00000052	ENSGAFP00000001196	ENSGAFP00000006463	Uncharacterized protein.	Uncharacterized protein.	0.532
CCH79_00004814	CCH79_00009243	ENSGAFP00000001196	ENSGAFP00000026592	Uncharacterized protein.	Uncharacterized protein.	0.793
CCH79_00004814	CCH79_00010296	ENSGAFP00000001196	ENSGAFP00000018897	Uncharacterized protein.	Uncharacterized protein.	0.796
CCH79_00004814	CCH79_00014518	ENSGAFP00000001196	ENSGAFP00000004383	Uncharacterized protein.	Complex1_49kDa domain-containing protein; Belongs to the complex I 49 kDa subunit family.	0.634
CCH79_00004814	NDUFS8	ENSGAFP00000001196	ENSGAFP00000003633	Uncharacterized protein.	Uncharacterized protein.	0.793
CCH79_00009243	CCH79_00004814	ENSGAFP00000026592	ENSGAFP00000001196	Uncharacterized protein.	Uncharacterized protein.	0.793
CCH79_00009243	CCH79_00009521	ENSGAFP00000026592	ENSGAFP00000016527	Uncharacterized protein.	CoA carboxyltransferase C-terminal domain-containing protein.	0.712
CCH79_00009243	CCH79_00009725	ENSGAFP00000026592	ENSGAFP00000031174	Uncharacterized protein.	Uncharacterized protein.	0.945
CCH79_00009243	CCH79_00010296	ENSGAFP00000026592	ENSGAFP00000018897	Uncharacterized protein.	Uncharacterized protein.	0.867
CCH79_00009243	CCH79_00014518	ENSGAFP00000026592	ENSGAFP00000004383	Uncharacterized protein.	Complex1_49kDa domain-containing protein; Belongs to the complex I 49 kDa subunit family.	0.999
CCH79_00009243	NDUFS8	ENSGAFP00000026592	ENSGAFP00000003633	Uncharacterized protein.	Uncharacterized protein.	0.887
CCH79_00009521	CCH79_00004265	ENSGAFP00000016527	ENSGAFP00000013759	CoA carboxyltransferase C-terminal domain-containing protein.	Uncharacterized protein.	0.411
CCH79_00009521	CCH79_00009243	ENSGAFP00000016527	ENSGAFP00000026592	CoA carboxyltransferase C-terminal domain-containing protein.	Uncharacterized protein.	0.712
CCH79_00009521	CCH79_00010296	ENSGAFP00000016527	ENSGAFP00000018897	CoA carboxyltransferase C-terminal domain-containing protein.	Uncharacterized protein.	0.792
CCH79_00009521	CCH79_00014518	ENSGAFP00000016527	ENSGAFP00000004383	CoA carboxyltransferase C-terminal domain-containing protein.	Complex1_49kDa domain-containing protein; Belongs to the complex I 49 kDa subunit family.	0.402
CCH79_00009521	NDUFS8	ENSGAFP00000016527	ENSGAFP00000003633	CoA carboxyltransferase C-terminal domain-containing protein.	Uncharacterized protein.	0.712