ENSGAFP00000019621 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000019621

annotation not available (320 aa)

Predicted Functional Partners:

CCH79_00011197

0.894

ENSGAFP00000028698

0.894

CCH79_00013635

0.862

CCH79_00013849

0.862

CCH79_00000095

0.850

ENSGAFP00000025571

0.842

ENSGAFP00000029611

0.842

CCH79_00002518

0.842

MED10

0.829

CCH79_00019653

0.827

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00000095	CCH79_00002518	ENSGAFP00000008283	ENSGAFP00000031406	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.992
CCH79_00000095	CCH79_00019653	ENSGAFP00000008283	ENSGAFP00000003441	Uncharacterized protein.	Uncharacterized protein.	0.988
CCH79_00000095	ENSGAFP00000019621	ENSGAFP00000008283	ENSGAFP00000019621	Uncharacterized protein.	annotation not available	0.850
CCH79_00000095	MED10	ENSGAFP00000008283	ENSGAFP00000027735	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.989
CCH79_00002518	CCH79_00000095	ENSGAFP00000031406	ENSGAFP00000008283	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.992
CCH79_00002518	CCH79_00019653	ENSGAFP00000031406	ENSGAFP00000003441	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.999
CCH79_00002518	ENSGAFP00000019621	ENSGAFP00000031406	ENSGAFP00000019621	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	annotation not available	0.842
CCH79_00002518	ENSGAFP00000025571	ENSGAFP00000031406	ENSGAFP00000025571	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	annotation not available	0.587
CCH79_00002518	ENSGAFP00000029611	ENSGAFP00000031406	ENSGAFP00000029611	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	annotation not available	0.587
CCH79_00002518	MED10	ENSGAFP00000031406	ENSGAFP00000027735	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.999
CCH79_00011197	CCH79_00013635	ENSGAFP00000028697	ENSGAFP00000014289	Carrier domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.989
CCH79_00011197	CCH79_00013849	ENSGAFP00000028697	ENSGAFP00000019927	Carrier domain-containing protein.	PALB2_WD40 domain-containing protein.	0.989
CCH79_00011197	ENSGAFP00000019621	ENSGAFP00000028697	ENSGAFP00000019621	Carrier domain-containing protein.	annotation not available	0.894
CCH79_00011197	ENSGAFP00000025571	ENSGAFP00000028697	ENSGAFP00000025571	Carrier domain-containing protein.	annotation not available	0.713
CCH79_00011197	ENSGAFP00000029611	ENSGAFP00000028697	ENSGAFP00000029611	Carrier domain-containing protein.	annotation not available	0.713
CCH79_00013635	CCH79_00011197	ENSGAFP00000014289	ENSGAFP00000028697	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Carrier domain-containing protein.	0.989
CCH79_00013635	ENSGAFP00000019621	ENSGAFP00000014289	ENSGAFP00000019621	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	annotation not available	0.862
CCH79_00013635	ENSGAFP00000025571	ENSGAFP00000014289	ENSGAFP00000025571	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	annotation not available	0.873
CCH79_00013635	ENSGAFP00000028698	ENSGAFP00000014289	ENSGAFP00000028698	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	annotation not available	0.989
CCH79_00013635	ENSGAFP00000029611	ENSGAFP00000014289	ENSGAFP00000029611	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	annotation not available	0.873