ELOF1 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ELOF1

Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)

Predicted Functional Partners:

ENSGAFP00000027640

0.933

CCH79_00012956

0.896

CCH79_00010170

0.894

CCH79_00019757

0.881

ENSGAFP00000021320

0.876

CCH79_00004918

0.875

CCH79_00019189

0.873

POLR2E

0.872

CCH79_00005079

0.859

CCH79_00012599

0.856

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00004918	CCH79_00005079	ENSGAFP00000009268	ENSGAFP00000020404	Uncharacterized protein.	Uncharacterized protein.	0.996
CCH79_00004918	CCH79_00010170	ENSGAFP00000009268	ENSGAFP00000032595	Uncharacterized protein.	RPOLD domain-containing protein.	0.997
CCH79_00004918	CCH79_00012599	ENSGAFP00000009268	ENSGAFP00000002883	Uncharacterized protein.	S1 motif domain-containing protein.	0.996
CCH79_00004918	CCH79_00012956	ENSGAFP00000009268	ENSGAFP00000007989	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.947
CCH79_00004918	CCH79_00019189	ENSGAFP00000009268	ENSGAFP00000028973	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.997
CCH79_00004918	CCH79_00019757	ENSGAFP00000009268	ENSGAFP00000025083	Uncharacterized protein.	RPOL4c domain-containing protein.	0.996
CCH79_00004918	ELOF1	ENSGAFP00000009268	ENSGAFP00000020547	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.875
CCH79_00004918	ENSGAFP00000021320	ENSGAFP00000009268	ENSGAFP00000021320	Uncharacterized protein.	SPT4 homolog, DSIF elongation factor subunit.	0.998
CCH79_00004918	ENSGAFP00000027640	ENSGAFP00000009268	ENSGAFP00000027640	Uncharacterized protein.	SPT5 homolog, DSIF elongation factor subunit.	0.998
CCH79_00004918	POLR2E	ENSGAFP00000009268	ENSGAFP00000007490	Uncharacterized protein.	Uncharacterized protein.	0.996
CCH79_00005079	CCH79_00004918	ENSGAFP00000020404	ENSGAFP00000009268	Uncharacterized protein.	Uncharacterized protein.	0.996
CCH79_00005079	CCH79_00010170	ENSGAFP00000020404	ENSGAFP00000032595	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
CCH79_00005079	CCH79_00012599	ENSGAFP00000020404	ENSGAFP00000002883	Uncharacterized protein.	S1 motif domain-containing protein.	0.999
CCH79_00005079	CCH79_00012956	ENSGAFP00000020404	ENSGAFP00000007989	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CCH79_00005079	CCH79_00019189	ENSGAFP00000020404	ENSGAFP00000028973	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
CCH79_00005079	CCH79_00019757	ENSGAFP00000020404	ENSGAFP00000025083	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
CCH79_00005079	ELOF1	ENSGAFP00000020404	ENSGAFP00000020547	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.859
CCH79_00005079	ENSGAFP00000021320	ENSGAFP00000020404	ENSGAFP00000021320	Uncharacterized protein.	SPT4 homolog, DSIF elongation factor subunit.	0.991
CCH79_00005079	ENSGAFP00000027640	ENSGAFP00000020404	ENSGAFP00000027640	Uncharacterized protein.	SPT5 homolog, DSIF elongation factor subunit.	0.990
CCH79_00005079	POLR2E	ENSGAFP00000020404	ENSGAFP00000007490	Uncharacterized protein.	Uncharacterized protein.	0.999

page 1 of 6

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About