ENSGAFP00000020952 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000020952

annotation not available (104 aa)

Predicted Functional Partners:

ENSGAFP00000006885

0.746

ENSGAFP00000015301

0.716

ENSGAFP00000027892

0.715

CCH79_00003300

0.674

CCH79_00011586

0.659

ENSGAFP00000020435

0.650

CCH79_00010780

0.647

CCH79_00001590

0.643

CCH79_00003229

0.643

CCH79_00007014

0.643

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00001590	CCH79_00010780	ENSGAFP00000012393	ENSGAFP00000016312	Uncharacterized protein; Belongs to the peptidase S1 family.	Uncharacterized protein.	0.441
CCH79_00001590	ENSGAFP00000015301	ENSGAFP00000012393	ENSGAFP00000015301	Uncharacterized protein; Belongs to the peptidase S1 family.	annotation not available	0.722
CCH79_00001590	ENSGAFP00000020952	ENSGAFP00000012393	ENSGAFP00000020952	Uncharacterized protein; Belongs to the peptidase S1 family.	annotation not available	0.643
CCH79_00003229	CCH79_00010780	ENSGAFP00000015755	ENSGAFP00000016312	Uncharacterized protein.	Uncharacterized protein.	0.441
CCH79_00003229	ENSGAFP00000015301	ENSGAFP00000015755	ENSGAFP00000015301	Uncharacterized protein.	annotation not available	0.722
CCH79_00003229	ENSGAFP00000020952	ENSGAFP00000015755	ENSGAFP00000020952	Uncharacterized protein.	annotation not available	0.643
CCH79_00003300	CCH79_00011586	ENSGAFP00000017844	ENSGAFP00000015356	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.999
CCH79_00003300	ENSGAFP00000020952	ENSGAFP00000017844	ENSGAFP00000020952	Ig-like domain-containing protein.	annotation not available	0.674
CCH79_00007014	CCH79_00010780	ENSGAFP00000019456	ENSGAFP00000016312	Uncharacterized protein.	Uncharacterized protein.	0.441
CCH79_00007014	ENSGAFP00000015301	ENSGAFP00000019456	ENSGAFP00000015301	Uncharacterized protein.	annotation not available	0.724
CCH79_00007014	ENSGAFP00000020952	ENSGAFP00000019456	ENSGAFP00000020952	Uncharacterized protein.	annotation not available	0.643
CCH79_00010780	CCH79_00001590	ENSGAFP00000016312	ENSGAFP00000012393	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.441
CCH79_00010780	CCH79_00003229	ENSGAFP00000016312	ENSGAFP00000015755	Uncharacterized protein.	Uncharacterized protein.	0.441
CCH79_00010780	CCH79_00007014	ENSGAFP00000016312	ENSGAFP00000019456	Uncharacterized protein.	Uncharacterized protein.	0.441
CCH79_00010780	ENSGAFP00000020952	ENSGAFP00000016312	ENSGAFP00000020952	Uncharacterized protein.	annotation not available	0.647
CCH79_00010780	ENSGAFP00000027892	ENSGAFP00000016312	ENSGAFP00000027892	Uncharacterized protein.	annotation not available	0.495
CCH79_00011586	CCH79_00003300	ENSGAFP00000015356	ENSGAFP00000017844	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.999
CCH79_00011586	ENSGAFP00000020952	ENSGAFP00000015356	ENSGAFP00000020952	Ig-like domain-containing protein.	annotation not available	0.659
ENSGAFP00000006885	ENSGAFP00000020435	ENSGAFP00000006885	ENSGAFP00000020435	Ubiquitin A-52 residue ribosomal protein fusion product 1.	annotation not available	0.998
ENSGAFP00000006885	ENSGAFP00000020952	ENSGAFP00000006885	ENSGAFP00000020952	Ubiquitin A-52 residue ribosomal protein fusion product 1.	annotation not available	0.746