STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00013456Uncharacterized protein. (228 aa)    
Predicted Functional Partners:
CCH79_00016541
RRM domain-containing protein.
   
 0.991
CCH79_00010874
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.991
CCH79_00002649
Uncharacterized protein.
  
  
 
0.936
CCH79_00003136
RRM domain-containing protein.
   
 0.882
CCH79_00001866
Uncharacterized protein.
   
 0.849
CCH79_00010293
Uncharacterized protein.
   
 0.849
CCH79_00000893
Uncharacterized protein.
   
 0.841
CCH79_00018942
RRM domain-containing protein.
   
 0.824
ENSGAFP00000015016
Serine and arginine rich splicing factor 3a.
   
 0.803
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.803
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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