CCH79_00010160 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00010160

Olfactomedin-like domain-containing protein. (462 aa)

Predicted Functional Partners:

ENSGAFP00000030267

0.454

CCH79_00000109

0.434

LGR5

0.421

CCH79_00005053

0.421

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00000109	CCH79_00005053	ENSGAFP00000009043	ENSGAFP00000019778	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.410
CCH79_00000109	CCH79_00010160	ENSGAFP00000009043	ENSGAFP00000032582	Uncharacterized protein.	Olfactomedin-like domain-containing protein.	0.434
CCH79_00000109	LGR5	ENSGAFP00000009043	ENSGAFP00000005869	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.410
CCH79_00005053	CCH79_00000109	ENSGAFP00000019778	ENSGAFP00000009043	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.410
CCH79_00005053	CCH79_00010160	ENSGAFP00000019778	ENSGAFP00000032582	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Olfactomedin-like domain-containing protein.	0.421
CCH79_00005053	LGR5	ENSGAFP00000019778	ENSGAFP00000005869	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.905
CCH79_00010160	CCH79_00000109	ENSGAFP00000032582	ENSGAFP00000009043	Olfactomedin-like domain-containing protein.	Uncharacterized protein.	0.434
CCH79_00010160	CCH79_00005053	ENSGAFP00000032582	ENSGAFP00000019778	Olfactomedin-like domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.421
CCH79_00010160	ENSGAFP00000030267	ENSGAFP00000032582	ENSGAFP00000030267	Olfactomedin-like domain-containing protein.	Leucine-rich repeats and immunoglobulin-like domains 1.	0.454
CCH79_00010160	LGR5	ENSGAFP00000032582	ENSGAFP00000005869	Olfactomedin-like domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.421
ENSGAFP00000030267	CCH79_00010160	ENSGAFP00000030267	ENSGAFP00000032582	Leucine-rich repeats and immunoglobulin-like domains 1.	Olfactomedin-like domain-containing protein.	0.454
LGR5	CCH79_00000109	ENSGAFP00000005869	ENSGAFP00000009043	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.410
LGR5	CCH79_00005053	ENSGAFP00000005869	ENSGAFP00000019778	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.905
LGR5	CCH79_00010160	ENSGAFP00000005869	ENSGAFP00000032582	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Olfactomedin-like domain-containing protein.	0.421