node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Neut_0585 | Neut_0586 | Neut_0585 | Neut_0586 | PFAM: protein of unknown function UPF0125; KEGG: neu:NE0428 hypothetical protein; Belongs to the UPF0125 (RnfH) family. | PFAM: cyclase/dehydrase; KEGG: neu:NE0429 hypothetical protein. | 0.920 |
Neut_0585 | Neut_0589 | Neut_0585 | Neut_0589 | PFAM: protein of unknown function UPF0125; KEGG: neu:NE0428 hypothetical protein; Belongs to the UPF0125 (RnfH) family. | PFAM: RDD domain containing protein; KEGG: neu:NE0432 putative transmembrane protein. | 0.522 |
Neut_0585 | ctaA | Neut_0585 | Neut_0588 | PFAM: protein of unknown function UPF0125; KEGG: neu:NE0428 hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. | 0.663 |
Neut_0585 | smpB | Neut_0585 | Neut_0587 | PFAM: protein of unknown function UPF0125; KEGG: neu:NE0428 hypothetical protein; Belongs to the UPF0125 (RnfH) family. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.641 |
Neut_0586 | Neut_0585 | Neut_0586 | Neut_0585 | PFAM: cyclase/dehydrase; KEGG: neu:NE0429 hypothetical protein. | PFAM: protein of unknown function UPF0125; KEGG: neu:NE0428 hypothetical protein; Belongs to the UPF0125 (RnfH) family. | 0.920 |
Neut_0586 | ctaA | Neut_0586 | Neut_0588 | PFAM: cyclase/dehydrase; KEGG: neu:NE0429 hypothetical protein. | Cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. | 0.704 |
Neut_0586 | smpB | Neut_0586 | Neut_0587 | PFAM: cyclase/dehydrase; KEGG: neu:NE0429 hypothetical protein. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.645 |
Neut_0589 | Neut_0585 | Neut_0589 | Neut_0585 | PFAM: RDD domain containing protein; KEGG: neu:NE0432 putative transmembrane protein. | PFAM: protein of unknown function UPF0125; KEGG: neu:NE0428 hypothetical protein; Belongs to the UPF0125 (RnfH) family. | 0.522 |
Neut_0589 | ctaA | Neut_0589 | Neut_0588 | PFAM: RDD domain containing protein; KEGG: neu:NE0432 putative transmembrane protein. | Cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. | 0.575 |
Neut_0589 | smpB | Neut_0589 | Neut_0587 | PFAM: RDD domain containing protein; KEGG: neu:NE0432 putative transmembrane protein. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.547 |
Neut_1987 | Neut_2391 | Neut_1987 | Neut_2391 | PFAM: electron transport protein SCO1/SenC; KEGG: neu:NE0509 SCO1/SenC. | KEGG: neu:NE1012 SURF1 family. | 0.586 |
Neut_1987 | Neut_2393 | Neut_1987 | Neut_2393 | PFAM: electron transport protein SCO1/SenC; KEGG: neu:NE0509 SCO1/SenC. | PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: neu:NE1015 putative cytochrome C oxidase assembly transmembrane protein. | 0.732 |
Neut_1987 | Neut_2395 | Neut_1987 | Neut_2395 | PFAM: electron transport protein SCO1/SenC; KEGG: neu:NE0509 SCO1/SenC. | Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.587 |
Neut_1987 | ctaA | Neut_1987 | Neut_0588 | PFAM: electron transport protein SCO1/SenC; KEGG: neu:NE0509 SCO1/SenC. | Cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. | 0.539 |
Neut_1987 | ctaB | Neut_1987 | Neut_2389 | PFAM: electron transport protein SCO1/SenC; KEGG: neu:NE0509 SCO1/SenC. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.429 |
Neut_2391 | Neut_1987 | Neut_2391 | Neut_1987 | KEGG: neu:NE1012 SURF1 family. | PFAM: electron transport protein SCO1/SenC; KEGG: neu:NE0509 SCO1/SenC. | 0.586 |
Neut_2391 | Neut_2393 | Neut_2391 | Neut_2393 | KEGG: neu:NE1012 SURF1 family. | PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: neu:NE1015 putative cytochrome C oxidase assembly transmembrane protein. | 0.971 |
Neut_2391 | Neut_2395 | Neut_2391 | Neut_2395 | KEGG: neu:NE1012 SURF1 family. | Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.914 |
Neut_2391 | ctaA | Neut_2391 | Neut_0588 | KEGG: neu:NE1012 SURF1 family. | Cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. | 0.895 |
Neut_2391 | ctaB | Neut_2391 | Neut_2389 | KEGG: neu:NE1012 SURF1 family. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.942 |