Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Neut_0643Lytic transglycosylase, catalytic; PFAM: Sel1 domain protein repeat-containing protein; Lytic transglycosylase, catalytic; KEGG: neu:NE2226 SLT domain. (300 aa)    
Predicted Functional Partners:
Neut_0340
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: neu:NE0307 flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.
  
 
 0.818
Neut_0336
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: neu:NE0303 flagella basal body rod protein; Belongs to the flagella basal body rod proteins family.
  
 
 0.800
Neut_0219
KEGG: neu:NE0049 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.604
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.520
Neut_0420
PFAM: response regulator receiver; KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL).
  
  
 0.519
Neut_2003
PFAM: beta-ketoacyl synthase; KEGG: neu:NE1389 putative type I polyketide synthase WcbR.
  
 
 0.510
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
 
 0.505
Neut_0343
Flagellar rod assembly protein/muramidase FlgJ; KEGG: neu:NE0310 mannosyl-glycoprotein endo-beta-N-acetylglucosamidases; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2.
     
 0.498
Neut_0189
PFAM: OmpA/MotB domain protein; KEGG: neu:NE0045 bacterial outer membrane protein.
  
  
 0.489
Neut_0335
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
 
 0.467
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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