Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Neut_0803PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: nha:Nham_4331 transcriptional regulatory protein, LysR family. (306 aa)    
Predicted Functional Partners:
cbbL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
   
 0.826
Neut_0805
PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: nha:Nham_4333 ribulose bisphosphate carboxylase, small chain.
 
   
 0.734
Neut_0816
PFAM: von Willebrand factor, type A; KEGG: nwi:Nwi_1975 nitric oxide reductase activation protein.
 
     0.497
Neut_0772
PFAM: phosphoribulokinase/uridine kinase; KEGG: neu:NE1474 phosphoribulokinase.
  
   
 0.491
Neut_2321
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: neu:NE0947 hydrolase family.
  
     0.428
Neut_0219
KEGG: neu:NE0049 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
  
 0.407
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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