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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0807KEGG: nwi:Nwi_1984 carboxysome shell polypeptide, CsoS3. (509 aa)    
Predicted Functional Partners:
Neut_0806
KEGG: nha:Nham_4334 carboxysome shell protein CsoS2.
 
   
 0.959
Neut_0808
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: nha:Nham_4336 ethanolamine utilization protein EutN/carboxysome structural protein CcmL.
 
     0.942
Neut_0809
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: nha:Nham_4337 microcompartments protein.
 
     0.942
Neut_0813
KEGG: nha:Nham_4341 hypothetical protein.
 
     0.866
Neut_0817
PFAM: microcompartments protein; KEGG: nwi:Nwi_1974 hypothetical protein.
 
   
 0.783
Neut_0802
KEGG: nha:Nham_4043 nitrogen regulatory protein P-II (GlnB, GlnK).
  
   
 0.766
Neut_0805
PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: nha:Nham_4333 ribulose bisphosphate carboxylase, small chain.
 
   
 0.764
Neut_0810
PFAM: microcompartments protein; KEGG: nwi:Nwi_1981 carboxysome structural polypeptide.
 
   
 0.753
Neut_0811
PFAM: microcompartments protein; KEGG: nha:Nham_4339 carboxysome structural peptide CsoS1B.
 
   
 0.725
Neut_0801
KEGG: nha:Nham_4323 hypothetical protein; Belongs to the UPF0753 family.
 
     0.719
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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