STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0807KEGG: nwi:Nwi_1984 carboxysome shell polypeptide, CsoS3. (509 aa)    
Predicted Functional Partners:
Neut_0806
KEGG: nha:Nham_4334 carboxysome shell protein CsoS2.
 
   
 0.954
Neut_0805
PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: nha:Nham_4333 ribulose bisphosphate carboxylase, small chain.
 
 
 
 0.945
Neut_0808
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: nha:Nham_4336 ethanolamine utilization protein EutN/carboxysome structural protein CcmL.
 
     0.937
Neut_0809
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: nha:Nham_4337 microcompartments protein.
 
     0.937
cbbL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
 
 
 0.921
Neut_0813
KEGG: nha:Nham_4341 hypothetical protein.
 
     0.868
Neut_0817
PFAM: microcompartments protein; KEGG: nwi:Nwi_1974 hypothetical protein.
 
     0.775
Neut_0802
KEGG: nha:Nham_4043 nitrogen regulatory protein P-II (GlnB, GlnK).
  
     0.744
Neut_0810
PFAM: microcompartments protein; KEGG: nwi:Nwi_1981 carboxysome structural polypeptide.
 
   
 0.736
Neut_0801
KEGG: nha:Nham_4323 hypothetical protein; Belongs to the UPF0753 family.
  
     0.719
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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