Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0902KEGG: neu:NE1794 hypothetical protein. (335 aa)    
Predicted Functional Partners:
Neut_0903
KEGG: neu:NE1793 hypothetical protein.
 
     0.960
Neut_0899
TIGRFAM: eight transmembrane protein EpsH; KEGG: neu:NE1797 hypothetical protein.
 
     0.805
Neut_0894
KEGG: neu:NE1802 hypothetical protein.
 
     0.796
Neut_0900
PFAM: glycosyl transferase, group 1; KEGG: neu:NE1796 glycosyl transferase group 1.
 
     0.727
Neut_2173
KEGG: neu:NE0143 chain A, red copper protein nitrosocyanin.
  
     0.711
Neut_0901
KEGG: neu:NE1795 glutamine amidotransferase class-II:asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase.
 
     0.709
Neut_0897
KEGG: neu:NE1799 hypothetical protein.
 
   
 0.669
Neut_2072
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Sel1 domain protein repeat-containing protein; Tetratricopeptide domain protein; KEGG: neu:NE1444 TPR repeat.
 
     0.666
Neut_0892
PFAM: lipopolysaccharide biosynthesis; KEGG: neu:NE1804 chain length determinant protein.
 
     0.661
Neut_0898
PFAM: glycosyl transferase, group 1; KEGG: neu:NE1798 glycosyl transferase group 1.
 
     0.642
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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