Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0905KEGG: neu:NE1791 hypothetical protein. (315 aa)    
Predicted Functional Partners:
Neut_0903
KEGG: neu:NE1793 hypothetical protein.
 
     0.582
Neut_0902
KEGG: neu:NE1794 hypothetical protein.
 
     0.523
Neut_0894
KEGG: neu:NE1802 hypothetical protein.
 
     0.493
Neut_0904
PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: neu:NE1792 hypothetical protein.
       0.473
Neut_0900
PFAM: glycosyl transferase, group 1; KEGG: neu:NE1796 glycosyl transferase group 1.
 
     0.461
Neut_0318
Kef-type potassium/proton antiporter, CPA2 family; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: noc:Noc_2952 sodium/hydrogen exchanger, TrkA-N; TC 2.A.37.1; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.419
Neut_0899
TIGRFAM: eight transmembrane protein EpsH; KEGG: neu:NE1797 hypothetical protein.
 
     0.411
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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