Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Neut_0974ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1809 ABC transporter, ATP-binding protein. (229 aa)    
Predicted Functional Partners:
Neut_0973
PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease protein, putative.
 
   0.946
Neut_2012
PFAM: protein of unknown function DUF214; KEGG: neu:NE1900 DUF214.
 
   0.918
Neut_1343
PFAM: protein of unknown function DUF214; KEGG: neu:NE0826 putative ABC transport system permease protein.
 
   0.802
Neut_1344
PFAM: protein of unknown function DUF214; KEGG: neu:NE0825 putative ABC transport system permease protein.
 
   0.788
Neut_0975
PFAM: secretion protein HlyD family protein; KEGG: mca:MCA1810 hypothetical protein.
 
    0.763
Neut_1008
PFAM: ABC-2 type transporter; KEGG: neu:NE1210 putative ABC transporter permease protein.
 
      0.742
Neut_1007
PFAM: ABC-2 type transporter; KEGG: neu:NE1211 putative ABC transporter permease protein.
 
      0.629
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
   
 0.594
Neut_2302
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0063 ATPase component ABC-type (unclassified) transport system.
 
    
0.518
Neut_1935
PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1360 ABC transporter permease protein.
  
   0.505
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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