Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Neut_1663PFAM: protein of unknown function DUF1207; KEGG: neu:NE1230 hypothetical protein. (404 aa)    
Predicted Functional Partners:
Neut_1669
KEGG: neu:NE2041 hypothetical protein.
  
     0.681
Neut_0720
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: neu:NE1536 TonB-dependent receptor protein.
  
     0.668
Neut_1550
KEGG: neu:NE1571 hypothetical protein.
  
     0.652
Neut_1126
KEGG: neu:NE1841 hypothetical protein.
  
     0.570
Neut_0719
PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: neu:NE1537 BNR repeat.
  
     0.535
Neut_2275
KEGG: nmu:Nmul_A0578 hypothetical protein.
  
     0.531
Neut_2249
KEGG: neu:NE0096 hypothetical protein.
  
     0.530
Neut_0494
KEGG: neu:NE1629 hypothetical protein.
  
     0.528
Neut_1133
KEGG: neu:NE1833 hypothetical protein.
  
     0.520
Neut_2076
PFAM: Ammonia monooxygenase/methane monooxygenase, subunit B; KEGG: neu:NE2062 ammonia monooxygenase, subunit B.
  
    0.517
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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