Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Neut_1968PFAM: protein of unknown function DUF202; KEGG: neu:NE1885 DUF202. (124 aa)    
Predicted Functional Partners:
Neut_1965
KEGG: neu:NE1882 hypothetical protein.
       0.615
Neut_1966
KEGG: neu:NE1883 hypothetical protein.
       0.615
Neut_1967
PFAM: ATP dependent DNA ligase; KEGG: neu:NE1884 possible homolog of eukaryotic DNA ligase III.
       0.615
Neut_2062
KEGG: neu:NE0458 hypothetical protein.
  
     0.446
queH
Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
       0.420
Neut_1294
Alpha-amylase; PFAM: glycoside hydrolase, family 57; KEGG: neu:NE2032 glycosyl hydrolase family 57.
  
     0.414
Neut_1727
PFAM: PepSY-associated TM helix domain protein; KEGG: neu:NE0537 hypothetical protein.
  
     0.401
Neut_0938
PFAM: WD40 domain protein beta Propeller; KEGG: neu:NE1761 hypothetical protein.
  
     0.400
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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