Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Neut_1970KEGG: neu:NE1887 hypothetical protein. (448 aa)    
Predicted Functional Partners:
Neut_1971
PFAM: protein of unknown function DUF81; KEGG: neu:NE1888 domain of unknown function DUF81.
       0.724
Neut_1969
PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase; Belongs to the catalase family.
       0.699
Neut_1972
PFAM: protein of unknown function DUF55; KEGG: neu:NE1889 hypothetical protein.
       0.494
Neut_0915
KEGG: neu:NE1784 ABC transporter, fused permease and ATPase domains; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
     0.480
Neut_0440
KEGG: neu:NE1679 hypothetical protein.
  
     0.425
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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