Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Neut_1998Transcriptional regulator, XRE family protein; PFAM: helix-turn-helix domain protein; KEGG: tde:TDE1647 DNA-binding protein. (60 aa)    
Predicted Functional Partners:
Neut_1999
PFAM: protein of unknown function DUF497; KEGG: noc:Noc_1098 protein of unknown function DUF497.
 
     0.554
Neut_2000
KEGG: noc:Noc_1099 hypothetical protein.
 
     0.514
Neut_1570
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: neu:NE0335 prephenate dehydratase (PDT):chorismate mutase:ACT domain.
     
 0.466
Neut_1669
KEGG: neu:NE2041 hypothetical protein.
  
     0.455
Neut_2003
PFAM: beta-ketoacyl synthase; KEGG: neu:NE1389 putative type I polyketide synthase WcbR.
   
  
 0.438
Neut_0219
KEGG: neu:NE0049 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
      
 0.400
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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