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Neut_2003 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_2003" - PFAM: beta-ketoacyl synthase in Nitrosomonas eutropha
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_2003PFAM- beta-ketoacyl synthase; KEGG- neu-NE1389 putative type I polyketide synthase WcbR (660 aa)    
Predicted Functional Partners:
Neut_0458
PFAM- AMP-dependent synthetase and ligase; KEGG- neu-NE1658 acyl-CoA synthase (608 aa)
   
  0.993
Neut_1417
PFAM- AMP-dependent synthetase and ligase; KEGG- neu-NE1125 AMP-dependent synthetase and ligase (529 aa)
       
  0.887
Neut_1224
PFAM- transposase IS3/IS911 family protein; KEGG- mca-MCA1895 ISMca3, transposase, OrfA (107 aa)
              0.845
hemL
TIGRFAM- glutamate-1-semialdehyde-2,1-aminomutase; PFAM- aminotransferase class-III; KEGG- neu-NE1423 glutamate-1-semialdehyde 2,1-aminomutase protein (427 aa)
       
  0.790
Neut_0469
TIGRFAM- malonyl CoA-acyl carrier protein transacylase; PFAM- acyl transferase domain protein; KEGG- neu-NE1647 malonyl CoA-acyl carrier protein transacylase (312 aa)
   
  0.780
Neut_1974
PFAM- short-chain dehydrogenase/reductase SDR; KEGG- neu-NE1333 short-chain dehydrogenase/reductase (SDR) superfamily; Belongs to the short-chain dehydrogenases/reductases (SDR) family (272 aa)
 
 
  0.753
Neut_2001
PFAM- Integrase, catalytic region; KEGG- pol-Bpro_5204 integrase, catalytic region (282 aa)
              0.665
Neut_0724
PFAM- Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG- neu-NE1528 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein (852 aa)
         
  0.587
Neut_0461
Serine palmitoyltransferase; PFAM- aminotransferase, class I and II; KEGG- neu-NE1655 aminotransferase class-I (395 aa)
       
  0.583
Neut_2466
PFAM- AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG- mag-amb2972 acyl-CoA synthetase/AMP-acid ligase II (1146 aa)
         
  0.575
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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