Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Neut_2009PFAM: peptidase M48, Ste24p; KEGG: neu:NE1897 peptidase family M48. (504 aa)    
Predicted Functional Partners:
Neut_0918
PFAM: peptidase M23B; KEGG: neu:NE1781 peptidase family M23/M37.
 
 
   0.805
Neut_0517
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: neu:NE1600 TPR repeat.
 
 
 
 0.694
Neut_2010
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE1898 conserved hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.687
Neut_2012
PFAM: protein of unknown function DUF214; KEGG: neu:NE1900 DUF214.
       0.630
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.575
Neut_2011
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1899 ATPase component ABC-type (unclassified) transport system.
       0.559
Neut_2007
Phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: neu:NE1895 phosphoglucomutase and phosphomannomutase family.
       0.518
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.433
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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