STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_2012PFAM: protein of unknown function DUF214; KEGG: neu:NE1900 DUF214. (407 aa)    
Predicted Functional Partners:
Neut_2011
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1899 ATPase component ABC-type (unclassified) transport system.
   0.997
Neut_1342
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE0827 ATPase component ABC-type (unclassified) transport system.
   0.982
Neut_2010
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE1898 conserved hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.974
Neut_0628
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE2244 ATPase component ABC-type (unclassified) transport system.
   0.968
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
   0.948
Neut_0974
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1809 ABC transporter, ATP-binding protein.
 
   0.923
Neut_1516
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1404 ABC transporter, ATP-binding protein.
   0.898
Neut_1704
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1454 ABC transporter, ATPase subunit.
     0.878
Neut_1936
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase.
 
   0.873
Neut_1341
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: neu:NE0828 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.824
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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