Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Neut_2145PFAM: ADP-ribosylation/Crystallin J1; KEGG: neu:NE0396 hypothetical protein. (385 aa)    
Predicted Functional Partners:
Neut_1471
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: ppr:PBPRB1288 hypothetical phage portal protein.
    
   0.775
Neut_0802
KEGG: nha:Nham_4043 nitrogen regulatory protein P-II (GlnB, GlnK).
    
 
 0.762
Neut_2146
PFAM: protein of unknown function DUF167; KEGG: neu:NE0395 DUF167; Belongs to the UPF0235 family.
       0.639
Neut_2147
PFAM: protein of unknown function YGGT; KEGG: neu:NE0394 YGGT family.
       0.639
Neut_0838
PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: neu:NE2401 generic methyltransferase.
 
     0.630
Neut_0437
PFAM: O-antigen polymerase; KEGG: neu:NE1682 possible transmembrane protein.
  
     0.625
Neut_1054
Putative NrfJ; Similar to Wolinella succinogenes NrfJ encoded by GenBank Accession Number AJ245540; KEGG: neu:NE0784 putative (AJ245540) NrfJ [Wolinella succinogenes].
  
     0.610
Neut_2144
TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: neu:NE0397 6-phosphogluconate dehydrogenase.
       0.576
Neut_2522
PFAM: porin, Gram-negative type; KEGG: neu:NE2563 general diffusion gram-negative porins.
  
     0.568
Neut_1681
KEGG: neu:NE1504 hypothetical protein.
  
     0.563
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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