Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Neut_2170KEGG: neu:NE0146 TPR repeat; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein. (263 aa)    
Predicted Functional Partners:
Neut_2169
KEGG: neu:NE0147 hypothetical protein.
  
    0.829
Neut_1805
PFAM: Pilus assembly protein, PilO; KEGG: neu:NE2314 putative fimbrial type-4 assembly membrane transmembrane protein.
  
   
 0.784
Neut_1804
PFAM: Pilus assembly protein, PilQ; KEGG: neu:NE2313 putative type 4 fimbrial biogenesis protein PilP.
  
   
 0.780
Neut_1806
PFAM: Fimbrial assembly family protein; KEGG: neu:NE2315 putative type 4 fimbrial biogenesis protein PilN.
  
   
 0.779
Neut_0393
PFAM: Peptidoglycan-binding LysM; KEGG: neu:NE1969 LysM motif.
  
     0.760
Neut_1803
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB, short N-terminal domain; KEGG: neu:NE2312 probable fimbrial type-4 assembly signal peptide protein; Belongs to the bacterial secretin family.
  
   
 0.752
Neut_1807
TIGRFAM: type IV pilus assembly protein PilM; KEGG: neu:NE2316 putative type 4 fimbrial biogenesis protein PilM.
  
   
 0.751
rlmN
23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
  
    0.710
hisS
KEGG: neu:NE0150 histidine-tRNA synthetase protein; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein.
  
    0.700
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
  
    0.700
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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