Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Neut_2182PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: sme:SMc01227 putative glycerol trinitrate (GTN) reductase protein. (373 aa)    
Predicted Functional Partners:
Neut_0724
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: neu:NE1528 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein.
  
  
 0.691
Neut_2003
PFAM: beta-ketoacyl synthase; KEGG: neu:NE1389 putative type I polyketide synthase WcbR.
  
  
 0.557
Neut_2183
KEGG: bma:BMAA1290 ornithine cyclodeaminase.
  
    0.514
Neut_1190
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: neu:NE0858 hypothetical protein.
  
  
 0.491
Neut_1041
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: neu:NE0594 CDP-6-deoxy-delta-3,4-glucoseen reductase.
  
  
 0.464
Neut_2185
PFAM: cation efflux protein; KEGG: lpf:lpl2012 hypothetical protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
     0.459
Neut_2184
PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: dar:Daro_1444 phosphoglucomutase, alpha-D-glucose phosphate-specific.
       0.444
Neut_0400
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
  
 0.437
tuf1
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.402
tuf2
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.402
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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