STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_2201PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dar:Daro_2274 metal-dependent phosphohydrolase, HD subdomain. (435 aa)    
Predicted Functional Partners:
Neut_2127
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_0787 GGDEF.
 
 
 0.923
Neut_0598
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: neu:NE0440 domain of unknown function, DUF9.
 
 0.892
Neut_1444
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: neu:NE1154 domain of unknown function, DUF9:HAMP domain.
 
 0.830
Neut_0422
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 0.802
Neut_2285
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: neu:NE0080 diguanylate cyclase/phosphodiesterase domain 2 (EAL).
 
   
 0.783
Neut_2077
PFAM: Ammonia monooxygenase/methane monooxygenase, subunit A; KEGG: neu:NE2063 ammonia monooxygenase, subunit A.
   
 
 0.745
Neut_2318
PFAM: Ammonia monooxygenase/methane monooxygenase, subunit A; KEGG: neu:NE2063 ammonia monooxygenase, subunit A.
   
 
 0.745
Neut_0525
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: bxe:Bxe_B2102 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
   
 0.728
Neut_2200
KEGG: sfx:S2705 putative transposase.
       0.727
Neut_1019
PFAM: EAL domain protein; response regulator receiver; KEGG: neu:NE0566 domain of unknown function 2:response regulator receiver domain.
 
  
 0.703
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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