Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Neut_2249KEGG: neu:NE0096 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Neut_0650
KEGG: neu:NE2218 hypothetical protein.
  
     0.774
Neut_2076
PFAM: Ammonia monooxygenase/methane monooxygenase, subunit B; KEGG: neu:NE2062 ammonia monooxygenase, subunit B.
  
     0.773
Neut_2077
PFAM: Ammonia monooxygenase/methane monooxygenase, subunit A; KEGG: neu:NE2063 ammonia monooxygenase, subunit A.
  
     0.773
Neut_2317
PFAM: Ammonia monooxygenase/methane monooxygenase, subunit B; KEGG: neu:NE2062 ammonia monooxygenase, subunit B.
  
     0.773
Neut_2318
PFAM: Ammonia monooxygenase/methane monooxygenase, subunit A; KEGG: neu:NE2063 ammonia monooxygenase, subunit A.
  
     0.773
Neut_0230
KEGG: neu:NE2461 hypothetical protein.
  
     0.771
Neut_2078
PFAM: Ammonia monooxygenase/methane monooxygenase, subunit C; KEGG: neu:NE0945 ammonia monooxygenase subunit C2.
  
     0.770
Neut_2319
PFAM: Ammonia monooxygenase/methane monooxygenase, subunit C; KEGG: neu:NE0945 ammonia monooxygenase subunit C2.
  
     0.770
Neut_1520
PFAM: Ammonia monooxygenase/methane monooxygenase, subunit C; KEGG: neu:NE1411 ammonia monooxygenase 3 subunit C.
  
     0.769
Neut_0231
KEGG: neu:NE2461 hypothetical protein.
  
     0.767
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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