Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Neut_2255Plasmid and phage iteron-binding protein; PFAM: replication C family protein; KEGG: sfx:S2720 putative replication protein C. (293 aa)    
Predicted Functional Partners:
Neut_2254
Plasmid and phage replicative helicase; KEGG: sfx:S2721 putative DNA helicase.
       0.778
Neut_2253
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: sfx:S2722 hypothetical bacteriophage protein.
       0.774
Neut_2252
PFAM: phage integrase family protein; KEGG: sfx:S2723 putative integrase.
       0.477
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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