Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Neut_2285TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: neu:NE0080 diguanylate cyclase/phosphodiesterase domain 2 (EAL). (574 aa)    
Predicted Functional Partners:
Neut_0420
PFAM: response regulator receiver; KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL).
 
 
 0.975
Neut_0219
KEGG: neu:NE0049 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 0.970
Neut_0422
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
0.969
Neut_1019
PFAM: EAL domain protein; response regulator receiver; KEGG: neu:NE0566 domain of unknown function 2:response regulator receiver domain.
 
 
0.952
Neut_0598
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: neu:NE0440 domain of unknown function, DUF9.
 
 
 0.930
Neut_1444
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: neu:NE1154 domain of unknown function, DUF9:HAMP domain.
 
 
 0.929
Neut_1170
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; KEGG: neu:NE1863 probable chemotaxis transducer; TIGRFAM: PAS sensor protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.926
Neut_2127
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_0787 GGDEF.
 
 
 0.906
Neut_1199
Diguanylate phosphodiesterase; PFAM: EAL domain protein; PAS fold-4 domain protein; KEGG: neu:NE0865 PAS domain:domain of unknown function 2.
 
 
0.843
Neut_0796
KEGG: neu:NE1923 response regulator receiver domain.
  
 
 0.842
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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