Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABE73861.1 | ABE73862.1 | Pcryo_0077 | Pcryo_0078 | Peptidase C56, PfpI. | Conserved hypothetical protein. | 0.417 |
ABE73861.1 | ABE73894.1 | Pcryo_0077 | Pcryo_0110 | Peptidase C56, PfpI. | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.404 |
ABE73861.1 | ABE73991.1 | Pcryo_0077 | Pcryo_0207 | Peptidase C56, PfpI. | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein. | 0.498 |
ABE73861.1 | ABE74620.1 | Pcryo_0077 | Pcryo_0837 | Peptidase C56, PfpI. | DNA topoisomerase, type I, putative. | 0.527 |
ABE73861.1 | ABE75677.1 | Pcryo_0077 | Pcryo_1900 | Peptidase C56, PfpI. | Superoxide dismutase, copper/zinc binding protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.512 |
ABE73861.1 | guaA | Pcryo_0077 | Pcryo_0016 | Peptidase C56, PfpI. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.411 |
ABE73861.1 | nuoC | Pcryo_0077 | Pcryo_0575 | Peptidase C56, PfpI. | NADH dehydrogenase subunit C / NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.430 |
ABE73861.1 | polA | Pcryo_0077 | Pcryo_0419 | Peptidase C56, PfpI. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.438 |
ABE73861.1 | rplN | Pcryo_0077 | Pcryo_0494 | Peptidase C56, PfpI. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.424 |
ABE73861.1 | rpsJ | Pcryo_0077 | Pcryo_0483 | Peptidase C56, PfpI. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.495 |
ABE73862.1 | ABE73861.1 | Pcryo_0078 | Pcryo_0077 | Conserved hypothetical protein. | Peptidase C56, PfpI. | 0.417 |
ABE73894.1 | ABE73861.1 | Pcryo_0110 | Pcryo_0077 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Peptidase C56, PfpI. | 0.404 |
ABE73894.1 | nuoC | Pcryo_0110 | Pcryo_0575 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | NADH dehydrogenase subunit C / NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.998 |
ABE73991.1 | ABE73861.1 | Pcryo_0207 | Pcryo_0077 | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein. | Peptidase C56, PfpI. | 0.498 |
ABE73991.1 | ABE74620.1 | Pcryo_0207 | Pcryo_0837 | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein. | DNA topoisomerase, type I, putative. | 0.618 |
ABE74620.1 | ABE73861.1 | Pcryo_0837 | Pcryo_0077 | DNA topoisomerase, type I, putative. | Peptidase C56, PfpI. | 0.527 |
ABE74620.1 | ABE73991.1 | Pcryo_0837 | Pcryo_0207 | DNA topoisomerase, type I, putative. | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein. | 0.618 |
ABE74620.1 | polA | Pcryo_0837 | Pcryo_0419 | DNA topoisomerase, type I, putative. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.477 |
ABE75677.1 | ABE73861.1 | Pcryo_1900 | Pcryo_0077 | Superoxide dismutase, copper/zinc binding protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | Peptidase C56, PfpI. | 0.512 |
guaA | ABE73861.1 | Pcryo_0016 | Pcryo_0077 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Peptidase C56, PfpI. | 0.411 |
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