Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABE73984.1 | ABE73985.1 | Pcryo_0200 | Pcryo_0201 | Hypothetical protein. | NADH:flavin oxidoreductase/NADH oxidase. | 0.467 |
ABE73984.1 | ABE74650.1 | Pcryo_0200 | Pcryo_0869 | Hypothetical protein. | anti-ECFsigma factor, ChrR. | 0.750 |
ABE73984.1 | ABE75580.1 | Pcryo_0200 | Pcryo_1803 | Hypothetical protein. | Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | 0.478 |
ABE73984.1 | ABE75874.1 | Pcryo_0200 | Pcryo_2097 | Hypothetical protein. | MCP methyltransferase, CheR-type. | 0.782 |
ABE73984.1 | ABE76245.1 | Pcryo_0200 | Pcryo_2468 | Hypothetical protein. | PAS/PAC sensor hybrid histidine kinase. | 0.491 |
ABE73984.1 | rpoA | Pcryo_0200 | Pcryo_0509 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.776 |
ABE73984.1 | rpoB | Pcryo_0200 | Pcryo_2177 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.879 |
ABE73984.1 | rpoC | Pcryo_0200 | Pcryo_2176 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.924 |
ABE73984.1 | rpoZ | Pcryo_0200 | Pcryo_2004 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.757 |
ABE73984.1 | topA | Pcryo_0200 | Pcryo_1901 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.480 |
ABE73985.1 | ABE73984.1 | Pcryo_0201 | Pcryo_0200 | NADH:flavin oxidoreductase/NADH oxidase. | Hypothetical protein. | 0.467 |
ABE74650.1 | ABE73984.1 | Pcryo_0869 | Pcryo_0200 | anti-ECFsigma factor, ChrR. | Hypothetical protein. | 0.750 |
ABE75580.1 | ABE73984.1 | Pcryo_1803 | Pcryo_0200 | Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | Hypothetical protein. | 0.478 |
ABE75874.1 | ABE73984.1 | Pcryo_2097 | Pcryo_0200 | MCP methyltransferase, CheR-type. | Hypothetical protein. | 0.782 |
ABE75874.1 | ABE76245.1 | Pcryo_2097 | Pcryo_2468 | MCP methyltransferase, CheR-type. | PAS/PAC sensor hybrid histidine kinase. | 0.745 |
ABE76245.1 | ABE73984.1 | Pcryo_2468 | Pcryo_0200 | PAS/PAC sensor hybrid histidine kinase. | Hypothetical protein. | 0.491 |
ABE76245.1 | ABE75874.1 | Pcryo_2468 | Pcryo_2097 | PAS/PAC sensor hybrid histidine kinase. | MCP methyltransferase, CheR-type. | 0.745 |
ABE76245.1 | rpoZ | Pcryo_2468 | Pcryo_2004 | PAS/PAC sensor hybrid histidine kinase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.410 |
rpoA | ABE73984.1 | Pcryo_0509 | Pcryo_0200 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Hypothetical protein. | 0.776 |
rpoA | rpoB | Pcryo_0509 | Pcryo_2177 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
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