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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0041KEGG: tte:TTE0096 hypothetical protein. (149 aa)    
Predicted Functional Partners:
Swol_0042
KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit.
       0.773
Swol_0189
KEGG: tte:TTE0491 flagellar protein.
 
     0.760
Swol_0872
KEGG: dsy:DSY2971 hypothetical protein.
 
     0.719
Swol_0190
Anti-sigma-28 factor, FlgM; KEGG: dvu:DVU0523 negative regulator of flagellin synthesis FlgM.
 
 
   0.676
Swol_0043
KEGG: dsy:DSY0123 hypothetical protein.
  
  
 0.638
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.622
Swol_1503
YvyF; KEGG: bld:BLi03788 YvyF.
 
     0.613
Swol_2165
KEGG: tte:TTE0834 hypothetical protein.
  
     0.589
Swol_0194
KEGG: chy:CHY_0973 hypothetical protein.
 
     0.583
Swol_0862
CheC, inhibitor of MCP methylation; KEGG: dsy:DSY2981 hypothetical protein.
 
  
 0.559
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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