STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0066KEGG: mta:Moth_0074 hypothetical protein. (258 aa)    
Predicted Functional Partners:
Swol_0065
KEGG: chy:CHY_0189 transcriptional regulator, GntR family.
       0.787
Swol_0112
KEGG: mta:Moth_0149 hypothetical protein.
 
     0.783
Swol_1340
KEGG: mta:Moth_1327 protein of unknown function DUF1614.
  
     0.747
Swol_0111
KEGG: chy:CHY_2368 hypothetical protein.
  
     0.731
Swol_0563
KEGG: chy:CHY_1995 hypothetical protein.
  
     0.699
Swol_1339
KEGG: chy:CHY_1923 putative stage II sporulation protein P.
  
     0.697
Swol_1127
KEGG: chy:CHY_1923 putative stage II sporulation protein P.
  
     0.630
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.615
Swol_0562
KEGG: mta:Moth_1522 protein of unknown function DUF322.
  
     0.591
Swol_1259
KEGG: mta:Moth_1076 hypothetical protein.
  
     0.583
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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