STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0077KEGG: dsy:DSY4477 hypothetical protein. (381 aa)    
Predicted Functional Partners:
Swol_0078
KEGG: tte:TTE2379 germination protein.
 
  
 0.914
Swol_0079
Hypothetical protein; KEGG: mta:Moth_2041 spore germination protein.
 
  
 0.890
Swol_0074
KEGG: dsy:DSY4478 hypothetical protein.
 
  
 0.806
Swol_1192
KEGG: dsy:DSY4478 hypothetical protein.
 
  
 0.806
GrkA
grkA; KEGG: grkA; spore germination protein, GrkA.
 
  
 0.803
Swol_0605
Uncharacterized membrane protein; KEGG: mta:Moth_1503 required for dissolution of the septal cell wall; RBL05740.
  
     0.720
Swol_0834
Sporulation factor SpoIIGA. Unknown type peptidase. MEROPS family U04; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.707
Swol_0093
KEGG: tte:TTE2396 serine phosphatase RsbU, regulator of sigma subunit.
  
     0.699
Swol_1414
KEGG: mta:Moth_1358 hypothetical protein.
  
     0.689
Swol_0554
KEGG: mta:Moth_1532 hypothetical protein.
  
     0.685
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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