STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0111KEGG: chy:CHY_2368 hypothetical protein. (176 aa)    
Predicted Functional Partners:
Swol_0112
KEGG: mta:Moth_0149 hypothetical protein.
 
     0.874
Swol_1340
KEGG: mta:Moth_1327 protein of unknown function DUF1614.
  
     0.737
Swol_0066
KEGG: mta:Moth_0074 hypothetical protein.
  
     0.731
Swol_1339
KEGG: chy:CHY_1923 putative stage II sporulation protein P.
  
     0.700
Swol_0625
KEGG: mta:Moth_1493 protein of unknown function DUF1458.
  
     0.655
Swol_1127
KEGG: chy:CHY_1923 putative stage II sporulation protein P.
  
     0.650
Swol_1259
KEGG: mta:Moth_1076 hypothetical protein.
  
     0.625
Swol_0557
Hypothetical protein; KEGG: tte:TTE1290 stage III sporulation protein AH.
  
     0.550
Swol_1444
KEGG: mta:Moth_0580 hypothetical protein.
  
     0.538
Swol_0110
Putative TIM-barrel protein, NifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.521
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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