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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0131KEGG: mta:Moth_2363 putative transmembrane transcriptional regulator (anti-sigma factor). (347 aa)    
Predicted Functional Partners:
Swol_0132
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mta:Moth_2362 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.908
Swol_0130
KEGG: mta:Moth_2364 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
   
 0.787
Swol_0139
Hypothetical protein; KEGG: mta:Moth_2343 copper amine oxidase-like.
  
     0.768
Swol_1434
KEGG: mta:Moth_1703 hypothetical protein.
  
     0.760
Swol_1043
Hypothetical protein; KEGG: mta:Moth_1459 Ig-like, group 2.
  
     0.751
Swol_0127
Hypothetical protein; KEGG: mta:Moth_1253 O-antigen polymerase.
  
     0.749
Swol_1260
Hypothetical protein; KEGG: btk:BT9727_0789 possible S-layer protein.
  
     0.746
Swol_2474
KEGG: mta:Moth_2069 PilT protein-like.
  
     0.745
Swol_1743
KEGG: mba:Mbar_A3737 hypothetical protein.
  
     0.739
Swol_0052
KEGG: tte:TTE1657 hypothetical protein.
  
     0.733
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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