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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0149KEGG: bca:BCE0397 phage terminase, large subunit, putative. (229 aa)    
Predicted Functional Partners:
Swol_1466
KEGG: bca:BCE0400 phage major capsid protein, HK97 family.
 
   
 0.824
Swol_0153
KEGG: bca:BCE0398 phage portal protein, HK97 family.
 
   
 0.815
Swol_2199
KEGG: det:DET1087 portal protein, HK97 family, putative.
 
   
 0.815
Swol_2215
KEGG: bca:BCE0419 DNA recombinase, putative.
 
   
 0.733
Swol_0151
KEGG: dsy:DSY2308 hypothetical protein.
       0.588
Swol_0150
KEGG: dsy:DSY2307 hypothetical protein.
       0.572
Swol_1465
KEGG: bcl:ABC1368 hypothetical protein.
 
     0.546
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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