Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0174KEGG: sth:STH1184 hypothetical protein, aspartate-rich. (438 aa)    
Predicted Functional Partners:
Swol_0458
KEGG: pfa:PF10_0351 hypothetical protein.
  
 
   0.707
Swol_0163
Hypothetical protein; KEGG: mta:Moth_0241 glycosyl hydrolase, BNR repeat.
 
   
 0.683
Swol_2188
Hypothetical protein.
  
     0.655
Swol_1265
KEGG: chy:CHY_1159 DNA translocase FtsK.
   
 
 0.646
Swol_0165
FOG: WD40-like repeat protein; KEGG: mac:MA4287 cell surface protein.
  
   
 0.644
Swol_1682
KEGG: chy:CHY_1866 hypothetical protein.
  
   
 0.638
Swol_0945
KEGG: ddi:DDB0204067 hypothetical protein.
  
   
 0.627
Swol_2063
KEGG: bca:BCE5566 hypothetical protein.
 
   
 0.610
Swol_2440
KEGG: ade:Adeh_3520 heat repeat protein.
  
     0.593
Swol_2160
KEGG: cac:CAC2592 6-pyruvoyl-tetrahydropterin synthase related domain; conserved membrane protein.
 
     0.589
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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