Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0219KEGG: tbd:Tbd_1974 hypothetical protein. (85 aa)    
Predicted Functional Partners:
Swol_0218
KEGG: eli:ELI_09120 hypothetical protein.
 
 
 
 0.971
Swol_0216
KEGG: mac:MA1852 hypothetical protein.
 
     0.678
Swol_0217
Hypothetical protein; KEGG: tte:TTE0712 predicted nucleotidyltransferases.
 
     0.620
Swol_0221
KEGG: hit:NTHI0086 hypothetical protein.
 
     0.614
Swol_0220
KEGG: cbu:CBU_1021 nucleotidyltransferase substrate-binding protein, putative.
 
     0.610
Swol_0795
KEGG: mta:Moth_2147 2-oxoisovalerate dehydrogenase, E1 component beta subunit.
 
 
 
 0.610
Swol_0572
KEGG: noc:Noc_2743 hypothetical protein.
 
 
 
 0.591
Swol_1009
KEGG: mhu:Mhun_2778 protein of unknown function UPF0150.
 
 
 
 0.533
Swol_1660
KEGG: chy:CHY_2497 hypothetical protein.
 
 
 
 0.533
Swol_1541
KEGG: mhu:Mhun_2778 protein of unknown function UPF0150.
 
 
 
 0.521
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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