STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0227KEGG: mbu:Mbur_1591 polysaccharide biosynthesis protein CapD. (337 aa)    
Predicted Functional Partners:
Swol_0229
KEGG: mhu:Mhun_3093 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.901
Swol_0228
KEGG: cac:CAC2166 nucleoside-diphosphate-sugar epimerase.
 
  
 0.796
Swol_0711
KEGG: bbr:BB0122 DegT/DnrJ/EryC1/StrS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.589
Swol_0703
Pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis; KEGG: tte:TTE0651 predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.576
Swol_0210
N-acetylneuraminate synthase; KEGG: mhu:Mhun_3098 N-acylneuraminate-9-phosphate synthase.
 
  
 0.530
Swol_0212
KEGG: cac:CAC2186 glycosyltransferase.
 
   
 0.524
Swol_0716
Pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis-like protein; KEGG: lic:LIC12168 aspartate aminotransferase.
  
  
 0.518
Swol_0201
KEGG: pcu:pc1566 hypothetical protein.
 
   
 0.501
Swol_1908
Glycosyltransferases involved in cell wall biogenesis-like protein; KEGG: pca:Pcar_1758 putative glycosyl transferase.
  
  
 0.473
Swol_0727
Carbohydrate oxidoreductase, putative; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.443
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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