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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0314KEGG: dsy:DSY3385 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Swol_0315
KEGG: bbr:BB2796 putative ABC transporter permease protein.
 
 0.987
Swol_1071
KEGG: dsy:DSY4874 hypothetical protein.
 
 0.971
Swol_1739
KEGG: plt:Plut_1037 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
 0.962
Swol_0316
KEGG: rfr:Rfer_2969 extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.917
Swol_1070
KEGG: chy:CHY_0504 glutamine ABC transporter, glutamine-binding protein.
 
 
 0.867
Swol_2458
KEGG: dsy:DSY3824 hypothetical protein.
 
 
    0.767
Swol_0313
KEGG: dsy:DSY3703 hypothetical protein.
       0.495
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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