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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0330KEGG: gsu:GSU2056 tripartite ATP-independent periplasmic transporters, DctQ component, putative. (163 aa)    
Predicted Functional Partners:
Swol_0329
KEGG: dde:Dde_2214 TRAP dicarboxylate transporter-DctM subunit.
 
 0.998
Swol_0331
KEGG: gsu:GSU2055 extracellular solute-binding protein, family 7.
 
  
 0.959
Swol_1997
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: pfo:Pfl_2556 GCN5-related N-acetyltransferase.
  
     0.552
Swol_1810
Hypothetical protein.
  
     0.469
Swol_1812
Hypothetical protein; KEGG: pfo:Pfl_2556 GCN5-related N-acetyltransferase.
  
     0.455
Swol_2455
KEGG: sat:SYN_00841 hypothetical cytosolic protein.
  
     0.424
Swol_2485
KEGG: pca:Pcar_2393 hypothetical protein.
  
     0.400
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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