Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swol_0331KEGG: gsu:GSU2055 extracellular solute-binding protein, family 7. (371 aa)    
Predicted Functional Partners:
Swol_0330
KEGG: gsu:GSU2056 tripartite ATP-independent periplasmic transporters, DctQ component, putative.
 
  
 0.952
Swol_0329
KEGG: dde:Dde_2214 TRAP dicarboxylate transporter-DctM subunit.
 
  
 0.933
Swol_2556
KEGG: gka:GK2980 branched chain amino acid ABC transporter (substrate-binding protein).
   
  
 0.648
Swol_0405
ABC-type sugar transport system periplasmic component-like protein; KEGG: tte:TTE0799 Sugar-binding periplasmic proteins/domains.
      
 0.641
Swol_0413
KEGG: fnu:FN1899 hypothetical lipoprotein.
     
 0.641
Swol_0698
Putative iron-sulfur-binding reductase; Oxidoreductase involved in syntrophic growth of S.wolfei with butyrate. Is presumed to link the electron flow from butyryl-CoA dehydrogenases to the membrane, in conjunction with the electron transfer flavoprotein EtfAB. May transfer electrons to the menaquinone pool of the membrane.
      
 0.641
Swol_0423
KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein.
      
 0.633
Swol_0091
KEGG: tte:TTE0064 Formate/nitrite family of transporters.
      
 0.618
Swol_1161
KEGG: mta:Moth_1139 protein of unknown function UPF0182.
      
 0.618
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
      
 0.618
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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