STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0331KEGG: gsu:GSU2055 extracellular solute-binding protein, family 7. (371 aa)    
Predicted Functional Partners:
Swol_0330
KEGG: gsu:GSU2056 tripartite ATP-independent periplasmic transporters, DctQ component, putative.
 
  
 0.959
Swol_0329
KEGG: dde:Dde_2214 TRAP dicarboxylate transporter-DctM subunit.
 
  
 0.942
Swol_2556
KEGG: gka:GK2980 branched chain amino acid ABC transporter (substrate-binding protein).
   
  
 0.492
Swol_0413
KEGG: fnu:FN1899 hypothetical lipoprotein.
     
 0.473
Swol_0405
ABC-type sugar transport system periplasmic component-like protein; KEGG: tte:TTE0799 Sugar-binding periplasmic proteins/domains.
      
 0.464
Swol_0423
KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein.
      
 0.441
Swol_2432
KEGG: dsy:DSY3920 hypothetical protein; Belongs to the nlpA lipoprotein family.
      
 0.441
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
      
 0.438
Swol_1161
KEGG: mta:Moth_1139 protein of unknown function UPF0182.
      
 0.437
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
      
 0.435
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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