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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0355KEGG: pab:PAB1330 chemotaxis response regulator. (234 aa)    
Predicted Functional Partners:
Swol_0876
KEGG: bha:BH2434 inhibition of CheR-mediated methylation of MCPs.
 
 0.967
Swol_0353
Putative CheA signal transduction histidine kinases; KEGG: mag:amb1466 predicted ATPase.
 
 0.965
Swol_0862
CheC, inhibitor of MCP methylation; KEGG: dsy:DSY2981 hypothetical protein.
 
 0.954
Swol_0874
Putative CheA signal transduction histidine kinases; KEGG: gka:GK1242 two-component sensor histidine kinase (chemotaxis protein).
 
 0.929
Swol_0335
KEGG: rpc:RPC_4604 CheC, inhibitor of MCP methylation.
  
 0.925
Swol_1455
KEGG: dde:Dde_1577 CheA signal transduction histidine kinases.
 
 0.920
Swol_1332
Putative CheA signal transduction histidine kinases; KEGG: cac:CAC0118 chemotaxis protein cheA.
 
 0.917
Swol_1446
KEGG: cac:CAC0586 CheX protein (uncharacterized ORF in chemotaxis operon).
  
 
 0.912
Swol_1447
KEGG: bga:BG0694 chemotaxis operon protein.
  
 
 0.912
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
 
 
 
 0.778
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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