STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0415KEGG: fnu:FN1897 ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family. (343 aa)    
Predicted Functional Partners:
Swol_0414
KEGG: fnu:FN1898 sugar transport ATP-binding protein.
 
 
 0.975
Swol_0413
KEGG: fnu:FN1899 hypothetical lipoprotein.
 
  
 0.932
Swol_0416
KEGG: fnu:FN1896 ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
    
0.775
Swol_0423
KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein.
 
 
 0.774
Swol_0426
KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
 
 
 0.693
Swol_1990
KEGG: mac:MA3039 hypothetical protein.
  
     0.493
Swol_2088
Hypothetical protein; KEGG: mta:Moth_1439 SirA-like; Belongs to the sulfur carrier protein TusA family.
  
     0.455
Swol_1264
Hypothetical protein; KEGG: tte:TTE0326 sugar kinase, ribokinase family.
  
  
 0.401
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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