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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0427KEGG: tde:TDE0392 (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative. (382 aa)    
Predicted Functional Partners:
Swol_0428
KEGG: tde:TDE0387 (R)-hydroxyglutaryl-CoA dehydratase activator.
 
 0.983
Swol_0411
KEGG: mta:Moth_1417 CoA enzyme activase.
 
 0.934
Swol_0452
KEGG: chy:CHY_0311 putative CoA-substrate-specific enzyme activase.
 
 0.887
Swol_1887
KEGG: mta:Moth_0124 SirA-like; Belongs to the sulfur carrier protein TusA family.
 
    0.681
Swol_0518
KEGG: tde:TDE0239 glycine reductase complex protein GrdD.
  
     0.640
Swol_0422
KEGG: mmp:MMP0834 uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
    0.539
Swol_2089
KEGG: mta:Moth_1442 hypothetical protein.
 
    0.453
Swol_0419
KEGG: mmp:MMP0831 uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
    0.414
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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