STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0436KEGG: pca:Pcar_2447 4-hydroxybutyrate coenzyme A transferase. (446 aa)    
Predicted Functional Partners:
Swol_0435
KEGG: chy:CHY_1603 3-hydroxybutyryl-CoA dehydrogenase.
     
 0.720
Swol_0788
KEGG: bce:BC5342 acyl-CoA dehydrogenase, short-chain specific.
  
  
 0.476
Swol_2126
KEGG: sth:STH1571 acyl-CoA dehydrogenase, short-chain specific.
  
  
 0.467
Swol_0675
Acetyl-CoA C-acetyltransferase; KEGG: gme:Gmet_2213 thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.464
Swol_1934
acetyl-CoA acetyltransferase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the beta- keto thiolysis of acetoacetyl-CoA, leading to 2 acetyl-CoA molecules.
  
  
 0.464
Swol_1935
3-hydroxyacyl-CoA dehydrogenase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the oxidation of 3-hydroxybutyryl-CoA to acetoacetyl-CoA. Belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
     
 0.464
Swol_2030
KEGG: cac:CAC2708 3-hydroxybutyryl-CoA dehydrogenase.
     
 0.464
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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