STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_0445KEGG: sth:STH2441 putative chelatase. (402 aa)    
Predicted Functional Partners:
Swol_0446
Mg-chelatase subunit ChlD-like protein; KEGG: sth:STH2440 magnesium chelatase.
 
 0.998
Swol_1717
KEGG: rba:RB7502 hypothetical protein.
  
 
 0.807
Swol_1919
KEGG: tma:TM1852 hypothetical protein.
  
     0.492
Swol_2047
KEGG: mta:Moth_1895 alkylhydroperoxidase AhpD core.
  
     0.485
Swol_0408
KEGG: dsy:DSY3569 nitrogenase subunit NifH; Belongs to the NifH/BchL/ChlL family.
 
  
 0.482
Swol_0525
KEGG: sat:SYN_01761 pilin assembly protein.
  
     0.461
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
  
 0.458
Swol_0747
Hypothetical protein.
  
     0.432
Swol_2124
KEGG: dsy:DSY4296 hypothetical protein.
   
  
 0.431
Swol_2045
KEGG: sth:STH2659 small acid-soluble spore protein.
  
     0.423
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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